SQL Queries

BETYdb: Data Access

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SQL Queries

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SQL Queries

The BETYdb repository has a large number of example SQL queries if you search for the terms 'select' and 'join' in its issues.
SQL is the most flexible way of querying data from BETYdb. The full list of tables and schema on the website is up to date with the current database, but the tables below are stable.
These are the core tables required to query traits and yields:
We have created 'views' to make it easier to query data from multiple tables. For example, to lookup the name and location of a site or the names and units of variables. The following query joins multiple tables, and is based on the yieldsview table:
SELECT 'yields'::character(10) AS result_type,
    yields.id,
    yields.citation_id,
    yields.site_id,
    yields.treatment_id,
    sites.sitename,
    sites.city,
    st_y(st_centroid(sites.geometry)) AS lat,
    st_x(st_centroid(sites.geometry)) AS lon,
    species.scientificname,
    species.commonname,
    species.genus,
    species.id AS species_id,
    yields.cultivar_id,
    citations.author,
    citations.year AS citation_year,
    treatments.name AS treatment,
    yields.date,
    date_part('month'::text, yields.date) AS month,
    date_part('year'::text, yields.date) AS year,
    variables.name AS trait,
    variables.description AS trait_description,
    yields.mean,
    variables.units,
    yields.n,
    yields.statname,
    yields.stat,
    yields.notes,
   FROM ((((((yields
     LEFT JOIN sites ON ((yields.site_id = sites.id)))
     LEFT JOIN species ON ((yields.specie_id = species.id)))
     LEFT JOIN citations ON ((yields.citation_id = citations.id)))
     LEFT JOIN treatments ON ((yields.treatment_id = treatments.id)))
     LEFT JOIN variables ON (((variables.name)::text = 'Ayield'::text)))
     LEFT JOIN users ON ((yields.user_id = users.id)));

R dplyr Package

Appendix: Full Search Details

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