BETYdb Data Entry Workflow
BETYdb.orgGitHub
  • Introduction
  • Getting Started
  • Finding and Preparing Published Data
    • Preparing Published Data
  • Entering Meta-Data
    • Adding a citation
    • Adding a Site
    • Adding a Treatment
    • Adding Managements
    • Adding PFTs, Species, and Cultivars
  • Adding Trait and Yield Data
    • Web Interface
    • Bulk Upload
    • Adding Traits via the V1 API
  • Appendices
    • Quality Assurance
    • Extracting Data From Figures
    • Estimating SE from Summary Statistics
    • Common Unit Conversions
  • Acknowledgements
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  • Overview
  • Getting Started
  • Sign up for BETYdb
  • Other Accounts

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Getting Started

PreviousIntroductionNextFinding and Preparing Published Data

Last updated 2 years ago

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Overview

This is the user guide for entering data into the BETYdb database. The goal of this guide is to provide a consistent method of data entry that is transparent, reproducible, and well documented. The steps here generally accomplish one of two goals.

The first goal is to provide data that is associated with the experimental methods, species, site, and other factors associated with the original study. The second goal is to provide a record of all the transformations, assumptions, and data extraction steps used to migrate data from the primary literature to the standardized framework of the database.

Getting Started

Sign up for BETYdb

At a minimum, you should create an account on the instance of BETYdb that you will be using. For example, . Other instances of BETYdb include:

Institution

url

Maintainer

University of Illinois

David LeBauer

Boston University

Mike Dietze

Brookhaven National Lab

Shawn Serbin

University of Wisconsin

Ankur Desai

TERRA Ref

David LeBauer

Other Accounts

There are multiple research groups running the database. To use the database; request "creator" access during signup to enter data; request "manager" to perform QA/QC.

  • to track and annotate citaitons.

  • to prepare and transform data prior to entry.

  • to track data that need to be checked and/or corrected.

BETYdb.org
Mendeley
Google Docs
Github
https://betydb.org
https://psql-pecan.bu.edu/bety
http://modex.test.bnl.gov/bety
http://tree.aos.wisc.edu:6480/bety
https://terraref.ncsa.illinois.edu/bety